Chevron Left
返回到 Whole genome sequencing of bacterial genomes - tools and applications

学生对 Technical University of Denmark (DTU) 提供的 Whole genome sequencing of bacterial genomes - tools and applications 的评价和反馈

4.6
星
1,603 个评分

课程概述

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

热门审阅

SP

Sep 30, 2018

This course helped me a lot in determining bacterial typing. Just one question, in some quizzes I got some answers wrong so is there any way of knowing the right answer.

AR

May 18, 2023

Excellent course for students who don't know much about sequencing and its analysis. It's very easy and very understandable for students new to bioinformatics.

筛选依据：

251 - Whole genome sequencing of bacterial genomes - tools and applications 的 275 个评论（共 419 个）

创建者 Alida O

•

Sep 19, 2024

niveau de difficultés parfait

创建者 Muhammad I

•

Sep 8, 2024

Well explained by the tutors

创建者 Tanvi B

•

Jul 4, 2022

Very Informative and helpful

创建者 1806071

•

Sep 8, 2019

Very very informative course

创建者 Riyadh A

•

May 13, 2025

Very helpful for beginners.

创建者 Katarina E

•

Mar 30, 2022

Very practical and useful!

创建者 Pamela M

•

Apr 21, 2021

The best course about WGS!

创建者 Mayur M

•

Jun 25, 2020

Very Clear and informative

创建者 Alexandru B

•

Mar 25, 2018

very useful. thanks a lot.

创建者 Moayad M A

•

Aug 21, 2017

very easy and interactive

创建者 HARISH A 1

•

Jun 18, 2020

i had finally learned

it

创建者 Elhandi k

•

Mar 8, 2022

wonderful cours !thanks

创建者 Mark R

•

Jul 5, 2018

简单明了，适合初学者和做细菌分型溯源的生物学家

创建者 karima f

•

Jan 25, 2025

very interested course

创建者 Pradeep K N

•

Jun 30, 2022

EXCELLENT PROJECT WORK

创建者 Verruchi G

•

Aug 14, 2020

ONE OF THE BEST COURSE

创建者 Hanan K M H

•

Jul 4, 2020

WONDERFUL >> THANK YOU

创建者 Mónica C V R

•

Feb 3, 2025

very good information

创建者 Paola D S

•

Jul 1, 2020

Useful, well planned!

创建者 Johanna M

•

Apr 24, 2020

T

h

a

n

k

y

o

u

.

T

h

e

c

o

u

r

s

e

w

a

s

创建者 Mustafa R

•

Jan 6, 2018

Very good, Thanks DTU

创建者 SRI J M

•

Dec 16, 2022

𝓔𝔁𝓬𝓮𝓵𝓵𝓮𝓷𝓬𝓮

创建者 Sonam J

•

Jul 25, 2023

Excellent lectures.

创建者 CHUKKA S K

•

Dec 1, 2020

very understandable

创建者 Rohini B

•

Nov 23, 2024

Informative course